Large-scale microscopy combined with tissue clearing and expansion enables nanoscale imaging of centimeter scale specimens.

Figure 1. Longitudinal tracking of TREE-directed transgene expression in injured mice by IVIS (A) Schematic illustration of study design. Albino BALB/c mice were systemically injected with AAV9 ...

In this paper, we propose a novel framework for computing single or multiple atlases (templates) from a large population of images. Unlike many existing methods, our proposed approach is distinguished ...

We present a new method for the atlas-free brain segmentation of proton-density-like 3D MRI images. We show how steerable filters can be efficiently combined with parametric spline surfaces to produce ...

Single-cell and spatial transcriptomics reveal a stress-induced EMT-like epithelial subset driving immune activation in silica-injured lung Tao Wang 1,2,3 Jianfeng Hao 1 Bing Li 2,3 Ahjol Hyraht 4 ...

This repository summarizes recent machine learning (ML) frameworks applied in spatial transcriptomics data analysis. These methods focus on discovering spatial domains, cell types, and embedding ...