The custom shading modules facilitate dotplot interpretation and motif identification by adding information ... The files can contain multiple sequences. For pairwise dotplots, the collage output is ...

Abstract: A particularly voluminous dataset in molecular genomics, known as whole genome alignments, has gained considerable importance over the last years. In this paper, we propose a compression ...

This repository contains the pipeline and files used to create a structure-informed profile Hidden Markov Model for the identification of the BPTI/Kunitz domain in protein sequences.

The goal of this paper is to propose the performance evaluation of the efficiency of parallel multiple alignment on the supercomputer BlueGene/P for the case study of investigating viral nucleotide ...

Analysis of putative atp8 genes in the families Dugesiidae and Dendrocoelidae (superfamily Geoplanoidea) revealed substantial differences in gene structure and hydrophobic patterns of amino acid ...