Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of nontreelike evolutionary events, like recombination, hybridization, or lateral gene transfer.

Phylogenetic trees summarize evolutionary relationships between organisms, and tools to analyze collections of phylogenetic trees enable contrasts between different genes’ ancestry. The BHV metric ...

Interactive notebook-based toolkit for codon-aware alignment, phylogenetic inference, and selection analysis (Ka/Ks, HGT) using MAFFT, IQ-TREE, and HyPhy. Ideal for exploratory and reproducible gen ...